Lemon Blueberry Cupcakes with Cream Cheese Frosting are a fresh, tangy, and sweet dessert that brings together the zesty brightness of lemon, the juicy burst of ripe blueberries, and the smooth richness of a classic cream cheese frosting. These cupcakes are ideal for spring and summer gatherings, birthdays, brunches, or simply as an indulgent treat for citrus and berry lovers. The combination of lemon and blueberry is both timeless and refreshing, creating a flavor profile that is vibrant yet comforting. With a moist, tender crumb and pockets of blueberry goodness throughout, topped with a silky frosting that balances tart and sweet, these cupcakes offer an elevated yet approachable dessert experience that feels both homemade and bakery-worthy.
The History of Lemon Blueberry Cupcakes
The pairing of lemon and blueberry dates back to traditional American and European baking, where both ingredients have long been celebrated in muffins, pies, and cakes. Blueberries are native to North America and have been used in indigenous cooking for centuries, while lemons were introduced to Europe and the Americas through trade routes centuries ago. As cupcakes grew in popularity throughout the 20th century due to their portability and portion control, bakers began experimenting with flavor combinations beyond chocolate and vanilla. Lemon and blueberry became a natural fit—lemon enhances the flavor of blueberries, and their combined tartness and sweetness offer a well-balanced bite. Cream cheese frosting, made popular through carrot cakes and red velvet cakes, eventually made its way to fruity cupcakes for its tangy contrast and creamy richness. Today, Lemon Blueberry Cupcakes with Cream Cheese Frosting represent a modern classic—simple enough for home baking, yet elegant enough for celebrations and special occasions.
Ingredients Breakdown
For the Lemon Blueberry Cupcakes:
- 1 ½ cups all-purpose flour
- 1 ½ tsp baking powder
- ¼ tsp baking soda
- ¼ tsp salt
- ½ cup unsalted butter, softened
- 1 cup granulated sugar
- 2 large eggs
- 1 tsp vanilla extract
- Zest of 1–2 lemons
- 2 tbsp fresh lemon juice
- ½ cup whole milk or buttermilk
- 1 cup fresh or frozen blueberries (tossed in 1 tsp flour to prevent sinking)
For the Cream Cheese Frosting:
- 8 oz cream cheese, softened
- ½ cup unsalted butter, softened
- 2 ½–3 cups powdered sugar (adjust for sweetness and consistency)
- 1 tsp vanilla extract
- 1–2 tsp lemon juice or zest (optional, for added tang)
- Pinch of salt
Optional Garnish:
- Fresh blueberries
- Lemon zest curls
- Edible flowers or mint leaves
Step-by-Step Recipe
1. Preheat the Oven: Set your oven to 350°F (175°C) and line a 12-count muffin tin with cupcake liners. If using frozen blueberries, keep them frozen until ready to add.
2. Prepare the Dry Ingredients: In a medium bowl, whisk together the flour, baking powder, baking soda, and salt. Set aside.
3. Cream the Butter and Sugar: In a large mixing bowl, cream the butter and sugar together using a hand or stand mixer on medium speed until light and fluffy, about 2–3 minutes.
4. Add Eggs and Flavorings: Beat in the eggs one at a time, then add vanilla extract, lemon zest, and lemon juice. Mix until well combined.
5. Alternate Dry Ingredients and Milk: With the mixer on low speed, alternate adding the dry ingredients and the milk in two batches, beginning and ending with the dry ingredients. Mix just until combined; do not overmix.
6. Fold in Blueberries: Gently fold the blueberries (lightly coated in flour) into the batter using a spatula. This helps keep them evenly distributed and prevents them from sinking.
7. Fill and Bake: Divide the batter evenly among the cupcake liners, filling each about ¾ full. Bake for 18–22 minutes, or until a toothpick inserted in the center comes out clean and the tops spring back to the touch. Let cupcakes cool in the pan for 5 minutes, then transfer to a wire rack to cool completely.
8. Make the Cream Cheese Frosting: In a large bowl, beat the softened cream cheese and butter together until smooth and creamy. Gradually add the powdered sugar, one cup at a time, beating until fluffy and smooth. Add the vanilla extract and lemon juice or zest if using. Beat for another minute until fully incorporated.
9. Frost and Decorate: Once cupcakes are completely cool, pipe or spread the cream cheese frosting on top. Garnish with fresh blueberries, a touch of lemon zest, or decorative elements of your choice.
Tips for the Perfect Lemon Blueberry Cupcakes
Use room temperature ingredients to ensure a smooth batter and even baking. Zest your lemons before juicing them to avoid a mess and get the most flavor. Tossing the blueberries in a little flour before folding them into the batter helps prevent them from sinking to the bottom. If using frozen blueberries, do not thaw them before adding or they may bleed into the batter. Avoid overmixing once the flour is added to keep the cupcakes soft and tender. Let the cupcakes cool completely before frosting to prevent the cream cheese frosting from melting. For a bakery-style finish, use a piping bag with a star tip to frost the cupcakes. Adding a touch of lemon zest or juice to the frosting enhances the tanginess and complements the cupcakes beautifully. Store frosted cupcakes in the refrigerator, but bring them to room temperature before serving for the best texture and flavor.
Variations and Customizations
Add a surprise filling by scooping out a small portion of the baked cupcake centers and adding blueberry jam or lemon curd before frosting. Replace blueberries with raspberries or blackberries for a different fruit twist. Use almond extract instead of vanilla for a subtle nutty note that complements both lemon and blueberries. For a lighter version, swap out some butter for Greek yogurt in the batter. Make them gluten-free using a 1:1 gluten-free flour blend. To make a lemon-only version, omit the berries and double the lemon zest and juice. For a vegan version, use dairy-free butter, plant-based milk, and egg replacers like flax eggs. Add poppy seeds to the batter for a lemon-blueberry-poppy hybrid. Create a layered mini cake by slicing each cupcake horizontally and adding frosting and fruit between layers.
Health Considerations and Nutritional Value
Lemon Blueberry Cupcakes with Cream Cheese Frosting are a rich, indulgent dessert, though they contain some ingredients with nutritional benefits. Blueberries are loaded with antioxidants, vitamin C, and fiber, contributing to brain and heart health. Lemons provide vitamin C and aid digestion. However, the cupcakes are also high in sugar, saturated fat, and calories due to the butter, sugar, and cream cheese frosting. One standard frosted cupcake can range between 300–400 calories. Healthier modifications include using whole wheat flour for part of the flour, reducing sugar by ¼, using low-fat cream cheese or Greek yogurt in the frosting, or omitting frosting entirely. Gluten-free and dairy-free adaptations are possible, though they may slightly alter texture. As with all desserts, these cupcakes are best enjoyed in moderation as part of a balanced diet.
FAQ
Can I use store-bought lemon juice? Fresh lemon juice is best for flavor, but bottled lemon juice can work in a pinch. Just ensure it’s 100% juice without additives.
Can I make these ahead of time? Yes, cupcakes can be baked 1–2 days in advance and stored in an airtight container. Frost just before serving for best results.
Can I freeze these cupcakes? Unfrosted cupcakes freeze well for up to 2 months. Thaw at room temperature and frost once fully thawed.
What kind of cream cheese should I use? Use full-fat block cream cheese for best results. Avoid whipped or spreadable kinds as they may affect texture.
How do I keep blueberries from sinking? Toss them in a teaspoon of flour before folding into the batter to help suspend them evenly.
Can I make these into a cake instead of cupcakes? Yes, you can use the same batter for a 9-inch round or 8×8-inch cake. Adjust baking time accordingly.
Do I need to refrigerate these? Yes, because of the cream cheese frosting, store the cupcakes in the refrigerator. Bring to room temperature before serving.
Can I skip the frosting? Absolutely. They’re still delicious without it and make a great snack-style muffin alternative.

Lemon Blueberry Cupcakes with Cream Cheese Frosting
Ingredients
Lemon Blueberry Cupcake Ingredients:
- 1 ½ cups 188g all-purpose flour, measured by spooning and leveling
- 2 teaspoons baking powder
- ½ teaspoon salt
- ½ cup 8 tablespoons / 113g unsalted butter, softened to room temperature
- 1 cup 200g granulated sugar
- 1 tablespoon freshly grated lemon zest
- 2 large eggs at room temperature
- 1 ½ teaspoons pure vanilla extract
- ½ cup 120ml whole milk or buttermilk, at room temperature
- ¼ cup 60ml fresh lemon juice
- 1 cup 140g fresh or frozen blueberries, lightly coated in 1 tablespoon of flour to prevent sinking
Cream Cheese Frosting Ingredients:
- 8 ounces 226g full-fat cream cheese (brick-style), softened to room temperature
- ¼ cup 4 tablespoons / 56g unsalted butter, softened to room temperature
- 2 cups 240g powdered sugar (confectioners’ sugar)
- 1 teaspoon pure vanilla extract
- Pinch of salt
- Optional garnish: fresh lemon slices and extra blueberries
Instructions
- Preheat the oven to 350°F (177°C). Line a 12-cup muffin pan with cupcake liners. This recipe makes approximately 15 cupcakes, so you’ll need to bake in two batches.
- Prepare the cupcake batter: In a large mixing bowl, whisk together the flour, baking powder, and salt. Set aside.
- In a separate large bowl, using either a handheld mixer or a stand mixer fitted with the paddle attachment, cream the butter, granulated sugar, and lemon zest on medium-high speed for about 3 minutes, or until light and fluffy. Scrape down the sides and bottom of the bowl as needed.
- Add the eggs and vanilla extract, then beat on medium-high speed for about 1 minute, until well combined. Scrape down the bowl again to ensure everything is evenly mixed.
- Reduce the mixer speed to low and gradually add the dry ingredients, alternating with the milk and lemon juice. Mix just until everything is incorporated. Be careful not to overmix.
- Using a spatula, gently fold in the blueberries, which have been tossed in flour to prevent sinking.
- Bake the cupcakes: Spoon or pour the batter into the prepared cupcake liners, filling each about 2/3 full to prevent overflow.
- Bake for 18–21 minutes, or until a toothpick inserted into the center comes out clean. For mini cupcakes (about 30–36), bake for 11–13 minutes at the same oven temperature.
- Allow the cupcakes to cool completely in the pan for a few minutes, then transfer them to a wire rack before frosting.
- Make the cream cheese frosting: In a large bowl, using a handheld or stand mixer fitted with either the whisk or paddle attachment, beat the cream cheese and butter together on medium speed for about 2 minutes, until smooth and creamy.
- Add the confectioners’ sugar, vanilla extract, and a pinch of salt. Start the mixer on low speed and beat for about 30 seconds, then increase to medium-high speed and continue beating for 2 full minutes, until light and fluffy. Taste the frosting and add a little more salt if desired.
- If you want to pipe decorative designs, chill the frosting in the refrigerator for at least 20 minutes before using to help it firm up.
- Frost and garnish: Once the cupcakes are completely cool, frost them using your preferred method. You can use a piping bag with a large round tip (like Ateco #808, as shown), or simply spread the frosting with a small icing spatula. Garnish with lemon slices, extra blueberries, or your favorite toppings if desired.
- Place the decorated cupcakes uncovered in the refrigerator for at least 20 minutes to help set the frosting before serving.
- Storage Tip: Store any leftover cupcakes covered in the refrigerator for up to 5 days. For easy storage and transport, a cupcake carrier is highly recommended.